During elongation, EF-Tu (prokaryotes) or eEF1A (eukaryotes) delivers aminoacyl-tRNA to the ribosomal A site in a GTP-dependent manner. GTP hydrolysis occurs upon correct codon-anticodon pairing (proofreading step). EF-G (prokaryotes) or eEF2 (eukaryotes) then catalyzes translocation of tRNAs and mRNA, advancing the ribosome by one codon.
Use cryo-EM structures or animations to visualize the three-site model of the ribosome (A, P, E). Trace the movement of tRNAs and mRNA through successive cycles. Understand how GTP hydrolysis provides energy and ensures fidelity.
From your study of translation initiation, you know that the ribosome assembles on the mRNA with the initiator tRNA positioned in the P site (peptidyl site), base-paired with the start codon. The A site (aminoacyl site) is empty and ready to accept the next aminoacyl-tRNA. Elongation is the repetitive cycle that builds the polypeptide chain one amino acid at a time, and it proceeds through three distinct steps: codon-directed binding, peptide bond formation, and translocation.
In the first step, an aminoacyl-tRNA does not simply float into the A site on its own. Instead, the elongation factor EF-Tu (in prokaryotes) or eEF1A (in eukaryotes) delivers it in a complex with GTP. Think of EF-Tu as an escort with a security clearance — it brings the charged tRNA to the ribosome and holds it in position while the ribosome checks whether the anticodon matches the codon in the A site. If the match is correct, the geometry of the codon-anticodon interaction triggers a conformational change in the ribosome that stimulates GTP hydrolysis on EF-Tu. This is the proofreading step: the energy of GTP hydrolysis is used not to form the peptide bond itself, but to introduce a kinetic delay that gives incorrectly matched tRNAs time to dissociate before the irreversible step. Only after GTP hydrolysis and EF-Tu release is the aminoacyl-tRNA fully accommodated into the A site.
Once the correct aminoacyl-tRNA is in the A site, peptidyl transferase — an activity of the ribosomal RNA itself (making the ribosome a ribozyme) — catalyzes formation of a peptide bond between the amino acid on the A-site tRNA and the growing polypeptide chain attached to the P-site tRNA. The polypeptide is transferred from the P-site tRNA to the A-site tRNA, leaving a deacylated (empty) tRNA in the P site. At this point, the ribosome is in a hybrid state — the tRNAs have shifted relative to the large subunit but not yet relative to the small subunit.
The final step of each cycle is translocation, driven by the elongation factor EF-G (prokaryotes) or eEF2 (eukaryotes). EF-G binds the ribosome with GTP and, upon hydrolysis, physically moves the ribosome one codon down the mRNA. The deacylated tRNA shifts from the P site to the E site (exit site) and is released, the peptidyl-tRNA moves from A to P, and a new codon is exposed in the empty A site. The entire cycle then repeats — at a remarkable rate of about 15–20 amino acids per second in bacteria. Each elongation factor participates transiently: EF-Tu and EF-G bind, do their work, and dissociate within each cycle. EF-Tu is recharged by the exchange factor EF-Ts, which swaps GDP for GTP, readying EF-Tu for another round of tRNA delivery.