Allopatric speciation occurs when geographic barriers prevent gene flow between populations, allowing independent evolution and accumulation of reproductive isolation. This is the dominant mode of speciation and is supported by patterns of biogeography and molecular clocks. Secondary contact between allopatric populations reveals degree of reproductive isolation achieved.
From your study of speciation, you know that new species arise when populations become reproductively isolated — when gene flow ceases and the populations diverge until they can no longer interbreed successfully. Allopatric speciation is the most straightforward and best-documented mechanism for how this happens: a physical barrier splits a population in two, gene flow stops, and the separated populations evolve independently until they become distinct species.
The geographic barrier can be anything that prevents individuals from moving between populations: a mountain range rising through tectonic uplift, a river changing course, a glacier advancing, a sea level rise flooding a land bridge, or even a highway fragmenting a habitat. What matters is not the nature of the barrier but its effect — it must be sufficient to halt gene flow for the organisms in question. A river that is an impenetrable barrier for a flightless beetle may be trivially crossed by a bird. This is why the same landscape can drive speciation in some lineages but not others.
Once separated, the two populations experience different selective pressures, different mutation events, and different patterns of genetic drift. Over generations, allele frequencies diverge. Adaptations to local conditions accumulate independently. Sexual selection may drive divergence in mating signals — different songs, different color patterns, different courtship behaviors. Genetic incompatibilities accumulate as a byproduct of independent evolution: genes that function well in the genetic background of one population may interact poorly with the genetic background of the other. Eventually, if the populations come back into contact — through the barrier eroding, climate shifts reconnecting habitat, or dispersal events — they may find that they can no longer produce viable or fertile offspring. At that point, speciation is complete.
Secondary contact is the critical test. When formerly separated populations meet again, several outcomes are possible. If reproductive isolation is complete, the two species coexist as distinct entities, perhaps competing for resources or partitioning the habitat. If isolation is partial, they may hybridize in a narrow zone where their ranges overlap — a hybrid zone — while remaining distinct elsewhere. If little isolation has accumulated, they may merge back into a single interbreeding population, and no speciation has occurred. The degree of isolation achieved depends on the duration of separation, the effective population sizes (smaller populations diverge faster through drift), and the strength of divergent selection. Allopatric speciation is considered the dominant mode of speciation because the requirement — geographic isolation — is easily met over geological time, and the evidence from island biogeography, continental drift, and molecular phylogenetics consistently shows that closely related species occupy adjacent but non-overlapping ranges, exactly as the model predicts.